During the compilation of the vortex tracker, I got the following warning:
ld: warning: libhdf5_hl.so.100, needed by /opt/share/netcdf-4.6.1/lib/libnetcdf.so, may conflict with libhdf5_hl.so.8
ld: warning: libhdf5.so.101, needed by /opt/share/netcdf-4.6.1/lib/libnetcdf.so, may conflict with libhdf5.so.8
Nonetheless, the compilation seemed to have succeed with the creation of all the executable files.
My environment for compilation is as follows:
# GFDL Vortex Tracker
module purge
module load zlib
module load pnetcdf
module load intel
source /opt/share/netcdf/4.6.1/netcdf-4.6.1.sh
source /storage01/chpc-optshare/hdf5/1.10.2/hdf5-1.10.2.sh
export HDF5_INC=$HDF5/include
export HDF5_LIB=$HDF5/lib
source /opt/share/jasper/1.900.1/jasper-1.900.1.sh
source /opt/share/libpng/1.6.36/libpng-1.6.36.sh
export LIB_Z_PATH=/opt/share/zlib/1.2.11/
export LIB_PNG_PATH=/opt/share/libpng/1.6.36/
export LIB_JASPER_PATH=/opt/share/jasper/1.900.1/
export PNETCDF=/opt/share/pnetcdf/intel/intelmpi/1.12.2
export PNETCDF_INC=$PNETCDF/include
export PNETCDF_LIB=$PNETCDF/lib
Running ls $HDF5/lib gives:
libhdf5.a libhdf5_hl.a libhdf5_hl.la libhdf5.so
libhdf5_fortran.a libhdf5hl_fortran.a libhdf5_hl.so libhdf5.so.101
libhdf5_fortran.la libhdf5hl_fortran.la libhdf5_hl.so.100 libhdf5.so.101.1.0
libhdf5_fortran.so libhdf5hl_fortran.so libhdf5_hl.so.100.1.0
libhdf5_fortran.so.100 libhdf5hl_fortran.so.100 libhdf5.la
libhdf5_fortran.so.100.1.1 libhdf5hl_fortran.so.100.0.2 libhdf5.settings
Any advice on resolving the warning will be appreciated. I have attached the compilation log below.
Thanks!
tracker_log.pdf
