Stack trace terminated abnormally

Submitted by yanyanhaohao on Wed, 06/09/2021 - 20:20
Forum: GSI-EnKf User Support | Build and Compile Issues

Hello,

I am using GSIv3.7 for DA experiments, and I have encounted a error which happens occasionally. 

I have attached stdout as log file. 

I'd appreciated with any ideas or suggerstions.

Permalink

Submitted by wmayfield on Wed, 06/09/2021 - 20:27

Hi,

Unfortunately I don't think we have the capability to have log file attachments. Would you mind pasting in some of the stdout leading up to the error? It may also help to know the results of running the util/gsienvreport.sh and if you can tell us a little about your configuration and case.

Thanks,

Will

Permalink

Submitted by yanyanhaohao on Wed, 06/09/2021 - 20:31

Hi, 

Thanks for ur reply. And I run util/gsienvreport.sh to get the following message:

-------------------!!! Disclaimer !!!------------------------------------------
 This shell script will report some enviromental information 
      about the host on which you plan to compile/run GSI/EnKF.
 The information will be displayed to the screen for you to review.
 You will decide what information is appropriate to be sent to helpdesk.
 The helpdesk does not collect any personal information.
-------------------------------------------------------------------------------
 
comgsi version  : v3.7
vendor_id    : GenuineIntel
model name    : Intel(R) Xeon(R) CPU E5-2650 v4 @ 2.20GHz
Processors      : 24
Current host    : ln1
Current OS      : Linux
Current shell   : bash
NETCDF          : /vol7/home/kongjun/SOFTWARES/netcdf

[INTEL]:
ifort (IFORT) 16.0.3 20160415
Copyright (C) 1985-2016 Intel Corporation.  All rights reserved.

[PGI]:

[GNU]:
GNU Fortran (GCC) 4.8.5 20150623 (Red Hat 4.8.5-11)
Copyright © 2015 Free Software Foundation, Inc.

mpirun --  /usr/local/mpi3/bin/mpirun
mpirun.lsf --  
mpiexec --  /usr/local/mpi3/bin/mpiexec
qsub --  
bsub --  
sbatch --  /usr/bin/sbatch

The operation system and version information: 
Linux version 3.10.0-514.el7.x86_64 (mockbuild@x86-039.build.eng.bos.redhat.com) (gcc version 4.8.5 20150623 (Red Hat 4.8.5-11) (GCC) ) #1 SMP Wed Oct 19 11:24:13 EDT 2016
NAME="Red Hat Enterprise Linux Server"
VERSION="7.3 (Maipo)"
ID="rhel"
ID_LIKE="fedora"
VERSION_ID="7.3"
PRETTY_NAME="Red Hat Enterprise Linux Server 7.3 (Maipo)"
ANSI_COLOR="0;31"
CPE_NAME="cpe:/o:redhat:enterprise_linux:7.3:GA:server"
HOME_URL="https://www.redhat.com/"
BUG_REPORT_URL="https://bugzilla.redhat.com/"

REDHAT_BUGZILLA_PRODUCT="Red Hat Enterprise Linux 7"
REDHAT_BUGZILLA_PRODUCT_VERSION=7.3
REDHAT_SUPPORT_PRODUCT="Red Hat Enterprise Linux"
REDHAT_SUPPORT_PRODUCT_VERSION="7.3"
Red Hat Enterprise Linux Server release 7.3 (Maipo)
Red Hat Enterprise Linux Server release 7.3 (Maipo)

 

And the error messages as I mentioned before is:

Stack trace terminated abnormally.
forrtl: severe (174): SIGSEGV, segmentation fault occurred
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image              PC                Routine            Line        Source             

Stack trace terminated abnormally.
forrtl: severe (174): SIGSEGV, segmentation fault occurred

Stack trace terminated abnormally.
forrtl: severe (174): SIGSEGV, segmentation fault occurred
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image              PC                Routine            Line        Source             

Stack trace terminated abnormally.
forrtl: severe (174): SIGSEGV, segmentation fault occurred
forrtl: severe (174): SIGSEGV, segmentation fault occurred

Stack trace terminated abnormally.
forrtl: severe (174): SIGSEGV, segmentation fault occurred
forrtl: severe (174): SIGSEGV, segmentation fault occurred
forrtl: severe (174): SIGSEGV, segmentation fault occurred
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image              PC                Routine            Line        Source             

Stack trace terminated abnormally.
forrtl: severe (174): SIGSEGV, segmentation fault occurred
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image              PC                Routine            Line        Source   

 

Thanks again.

yan

Permalink

Submitted by wmayfield on Wed, 06/09/2021 - 23:39

Hi Yan,

Were you able to make progress? I apologize, our forum server seems to have had an issue and your post was lost for some time. Please let us know if you have further questions.

Will

Sitemap

Contact

303.497.8921
dtcenter@ucar.edu

Addresses

mailing:
PO Box 3000
Boulder, CO 80307-3000

Shipping:
3090 Center Green Dr.
Boulder, CO 80301

Follow Us

YouTube Icon
Twitter Icon

Copyright © 2024. All rights reserved.